Index

A B C D E F G H I L M O P R S T V W
All Classes All Packages

A

add(M, String) - Method in class com.canehealth.omopfhirmap.utils.AddOmopKeyAsIdentifier

add(Resource) - Method in class com.canehealth.omopfhirmap.utils.BundleProcessor

add(O, S, CohortService, int) - Method in class com.canehealth.omopfhirmap.utils.OmopProcessor

AddOmopKeyAsIdentifier<M extends BaseModel> - Class in com.canehealth.omopfhirmap.utils

AddOmopKeyAsIdentifier() - Constructor for class com.canehealth.omopfhirmap.utils.AddOmopKeyAsIdentifier

ASCIIART - Static variable in class com.canehealth.omopfhirmap.utils.OmopConstants

B

BaseFetcher<M> - Class in com.canehealth.omopfhirmap.fetchers

BaseFetcher() - Constructor for class com.canehealth.omopfhirmap.fetchers.BaseFetcher

BaseMapper<M extends BaseModel,F extends org.hl7.fhir.r4.model.Resource> - Class in com.canehealth.omopfhirmap.mapping

BaseMapper() - Constructor for class com.canehealth.omopfhirmap.mapping.BaseMapper

BaseModel - Class in com.canehealth.omopfhirmap.models

BaseModel() - Constructor for class com.canehealth.omopfhirmap.models.BaseModel

BaseService<J extends org.springframework.data.jpa.repository.JpaRepository<?,Integer>,C extends BaseModel> - Interface in com.canehealth.omopfhirmap.services

bundle - Static variable in class com.canehealth.omopfhirmap.utils.BundleProcessor

BundleProcessor - Class in com.canehealth.omopfhirmap.utils

BundleProcessor() - Constructor for class com.canehealth.omopfhirmap.utils.BundleProcessor

BundleRunnable<Model extends BaseModel,Mapper extends BaseMapper<Model,?>> - Class in com.canehealth.omopfhirmap.utils

BundleRunnable(Model, Mapper, BundleProcessor) - Constructor for class com.canehealth.omopfhirmap.utils.BundleRunnable

C

Cohort - Class in com.canehealth.omopfhirmap.models

Cohort() - Constructor for class com.canehealth.omopfhirmap.models.Cohort

CohortIdentity - Class in com.canehealth.omopfhirmap.models

CohortIdentity() - Constructor for class com.canehealth.omopfhirmap.models.CohortIdentity

CohortRepository - Interface in com.canehealth.omopfhirmap.repositories

CohortService - Class in com.canehealth.omopfhirmap.services

CohortService() - Constructor for class com.canehealth.omopfhirmap.services.CohortService

com.canehealth.omopfhirmap - package com.canehealth.omopfhirmap

com.canehealth.omopfhirmap.fetchers - package com.canehealth.omopfhirmap.fetchers

com.canehealth.omopfhirmap.fhir - package com.canehealth.omopfhirmap.fhir

com.canehealth.omopfhirmap.mapping - package com.canehealth.omopfhirmap.mapping

com.canehealth.omopfhirmap.models - package com.canehealth.omopfhirmap.models

com.canehealth.omopfhirmap.repositories - package com.canehealth.omopfhirmap.repositories

com.canehealth.omopfhirmap.services - package com.canehealth.omopfhirmap.services

com.canehealth.omopfhirmap.utils - package com.canehealth.omopfhirmap.utils

createBundle() - Method in class com.canehealth.omopfhirmap.mapping.MainMapper

ctx - Static variable in class com.canehealth.omopfhirmap.utils.BundleProcessor

D

DrugExposure - Class in com.canehealth.omopfhirmap.models

DrugExposure() - Constructor for class com.canehealth.omopfhirmap.models.DrugExposure

DrugExposureFetcher - Class in com.canehealth.omopfhirmap.fetchers

DrugExposureFetcher() - Constructor for class com.canehealth.omopfhirmap.fetchers.DrugExposureFetcher

DrugExposureRepository - Interface in com.canehealth.omopfhirmap.repositories

DrugExposureService - Class in com.canehealth.omopfhirmap.services

DrugExposureService() - Constructor for class com.canehealth.omopfhirmap.services.DrugExposureService

E

encodeBundleoXmlString() - Static method in class com.canehealth.omopfhirmap.utils.BundleProcessor

encodeBundleToJsonString() - Static method in class com.canehealth.omopfhirmap.utils.BundleProcessor

encodeResourceToJsonString() - Method in class com.canehealth.omopfhirmap.mapping.BaseMapper

encodeResourceToXmlString() - Method in class com.canehealth.omopfhirmap.mapping.BaseMapper

F

fetchCohort() - Method in class com.canehealth.omopfhirmap.mapping.MainMapper

fetchOmopResources() - Method in class com.canehealth.omopfhirmap.mapping.MainMapper

fhirResource - Variable in class com.canehealth.omopfhirmap.mapping.BaseMapper

findByCohortDefinitionId(Integer) - Method in interface com.canehealth.omopfhirmap.repositories.CohortRepository

findByPersonId(Integer) - Method in interface com.canehealth.omopfhirmap.repositories.DrugExposureRepository

findByPersonId(Integer) - Method in interface com.canehealth.omopfhirmap.repositories.MeasurementRepository

findByPersonId(Integer) - Method in interface com.canehealth.omopfhirmap.repositories.ObservationRepository

findByPersonId(Integer) - Method in interface com.canehealth.omopfhirmap.repositories.PersonRepository

findByPersonId(Integer) - Method in interface com.canehealth.omopfhirmap.repositories.ProcedureOccurrenceRepository

findByPersonId(Integer) - Method in interface com.canehealth.omopfhirmap.repositories.VisitOccurrenceRepository

findByPersonIdAndDrugExposureStartDateBetween(Integer, Date, Date) - Method in interface com.canehealth.omopfhirmap.repositories.DrugExposureRepository

findByPersonIdAndMeasurementDateBetween(Integer, Date, Date) - Method in interface com.canehealth.omopfhirmap.repositories.MeasurementRepository

findByPersonIdAndObservationDateBetween(Integer, Date, Date) - Method in interface com.canehealth.omopfhirmap.repositories.ObservationRepository

findByPersonIdAndProcedureDateBetween(Integer, Date, Date) - Method in interface com.canehealth.omopfhirmap.repositories.ProcedureOccurrenceRepository

findByPersonIdAndVisitStartDateBetween(Integer, Date, Date) - Method in interface com.canehealth.omopfhirmap.repositories.VisitOccurrenceRepository

G

getId() - Method in class com.canehealth.omopfhirmap.models.BaseModel

getId() - Method in class com.canehealth.omopfhirmap.models.DrugExposure

getId() - Method in class com.canehealth.omopfhirmap.models.Measurement

getId() - Method in class com.canehealth.omopfhirmap.models.Observation

getId() - Method in class com.canehealth.omopfhirmap.models.Person

getId() - Method in class com.canehealth.omopfhirmap.models.ProcedureOccurrence

getId() - Method in class com.canehealth.omopfhirmap.models.VisitOccurrence

H

HandleJsonFile - Class in com.canehealth.omopfhirmap.utils

HandleJsonFile() - Constructor for class com.canehealth.omopfhirmap.utils.HandleJsonFile

HELPSTRING - Static variable in class com.canehealth.omopfhirmap.utils.OmopConstants

I

IBaseMapper<M extends BaseModel,F extends org.hl7.fhir.r4.model.Resource> - Interface in com.canehealth.omopfhirmap.mapping

L

LICENSE - Static variable in class com.canehealth.omopfhirmap.utils.OmopConstants

list() - Method in interface com.canehealth.omopfhirmap.services.BaseService

list() - Method in class com.canehealth.omopfhirmap.services.CohortService

list() - Method in class com.canehealth.omopfhirmap.services.DrugExposureService

list() - Method in class com.canehealth.omopfhirmap.services.MeasurementService

list() - Method in class com.canehealth.omopfhirmap.services.ObservationService

list() - Method in class com.canehealth.omopfhirmap.services.PersonService

list() - Method in class com.canehealth.omopfhirmap.services.ProcedureOccurrenceService

list() - Method in class com.canehealth.omopfhirmap.services.VisitOccurrenceService

listByCohort(Integer) - Method in class com.canehealth.omopfhirmap.services.CohortService

listByPerson(Integer) - Method in interface com.canehealth.omopfhirmap.services.BaseService

listByPerson(Integer) - Method in class com.canehealth.omopfhirmap.services.DrugExposureService

listByPerson(Integer) - Method in class com.canehealth.omopfhirmap.services.MeasurementService

listByPerson(Integer) - Method in class com.canehealth.omopfhirmap.services.ObservationService

listByPerson(Integer) - Method in class com.canehealth.omopfhirmap.services.PersonService

listByPerson(Integer) - Method in class com.canehealth.omopfhirmap.services.ProcedureOccurrenceService

listByPerson(Integer) - Method in class com.canehealth.omopfhirmap.services.VisitOccurrenceService

listByPersonAndPeriod(Integer, Date, Date) - Method in interface com.canehealth.omopfhirmap.services.BaseService

listByPersonAndPeriod(Integer, Date, Date) - Method in class com.canehealth.omopfhirmap.services.DrugExposureService

listByPersonAndPeriod(Integer, Date, Date) - Method in class com.canehealth.omopfhirmap.services.MeasurementService

listByPersonAndPeriod(Integer, Date, Date) - Method in class com.canehealth.omopfhirmap.services.ObservationService

listByPersonAndPeriod(Integer, Date, Date) - Method in class com.canehealth.omopfhirmap.services.PersonService

listByPersonAndPeriod(Integer, Date, Date) - Method in class com.canehealth.omopfhirmap.services.ProcedureOccurrenceService

listByPersonAndPeriod(Integer, Date, Date) - Method in class com.canehealth.omopfhirmap.services.VisitOccurrenceService

M

main(String[]) - Static method in class com.canehealth.omopfhirmap.OmopfhirmapApplication

MainMapper - Class in com.canehealth.omopfhirmap.mapping

MainMapper() - Constructor for class com.canehealth.omopfhirmap.mapping.MainMapper

mapFhirToOmop() - Method in class com.canehealth.omopfhirmap.mapping.BaseMapper

mapFhirToOmop() - Method in interface com.canehealth.omopfhirmap.mapping.IBaseMapper

mapFhirToOmop() - Method in class com.canehealth.omopfhirmap.mapping.PatientMapper

mapOmopToFhir() - Method in class com.canehealth.omopfhirmap.mapping.BaseMapper

mapOmopToFhir() - Method in interface com.canehealth.omopfhirmap.mapping.IBaseMapper

mapOmopToFhir() - Method in class com.canehealth.omopfhirmap.mapping.PatientMapper

Measurement - Class in com.canehealth.omopfhirmap.models

Measurement() - Constructor for class com.canehealth.omopfhirmap.models.Measurement

MeasurementFetcher - Class in com.canehealth.omopfhirmap.fetchers

MeasurementFetcher() - Constructor for class com.canehealth.omopfhirmap.fetchers.MeasurementFetcher

MeasurementRepository - Interface in com.canehealth.omopfhirmap.repositories

MeasurementService - Class in com.canehealth.omopfhirmap.services

MeasurementService() - Constructor for class com.canehealth.omopfhirmap.services.MeasurementService

O

Observation - Class in com.canehealth.omopfhirmap.models

Observation() - Constructor for class com.canehealth.omopfhirmap.models.Observation

ObservationFetcher - Class in com.canehealth.omopfhirmap.fetchers

ObservationFetcher() - Constructor for class com.canehealth.omopfhirmap.fetchers.ObservationFetcher

ObservationRepository - Interface in com.canehealth.omopfhirmap.repositories

ObservationService - Class in com.canehealth.omopfhirmap.services

ObservationService() - Constructor for class com.canehealth.omopfhirmap.services.ObservationService

OMOP_FEMALE - Static variable in class com.canehealth.omopfhirmap.utils.OmopConstants

OMOP_MALE - Static variable in class com.canehealth.omopfhirmap.utils.OmopConstants

OmopConstants - Class in com.canehealth.omopfhirmap.utils

OmopConstants() - Constructor for class com.canehealth.omopfhirmap.utils.OmopConstants

OmopfhirmapApplication - Class in com.canehealth.omopfhirmap

OmopfhirmapApplication() - Constructor for class com.canehealth.omopfhirmap.OmopfhirmapApplication

OmopProcessor<O extends BaseModel,S extends BaseService<?,O>> - Class in com.canehealth.omopfhirmap.utils

OmopProcessor() - Constructor for class com.canehealth.omopfhirmap.utils.OmopProcessor

omopResource - Variable in class com.canehealth.omopfhirmap.mapping.BaseMapper

P

parseBundleFromJsonString(String) - Static method in class com.canehealth.omopfhirmap.utils.BundleProcessor

parseResourceFromJsonString(String) - Method in class com.canehealth.omopfhirmap.mapping.BaseMapper

PatientMapper - Class in com.canehealth.omopfhirmap.mapping

PatientMapper() - Constructor for class com.canehealth.omopfhirmap.mapping.PatientMapper

Person - Class in com.canehealth.omopfhirmap.models

Person() - Constructor for class com.canehealth.omopfhirmap.models.Person

PersonFetcher - Class in com.canehealth.omopfhirmap.fetchers

PersonFetcher() - Constructor for class com.canehealth.omopfhirmap.fetchers.PersonFetcher

PersonRepository - Interface in com.canehealth.omopfhirmap.repositories

PersonService - Class in com.canehealth.omopfhirmap.services

PersonService() - Constructor for class com.canehealth.omopfhirmap.services.PersonService

ProcedureOccurrence - Class in com.canehealth.omopfhirmap.models

ProcedureOccurrence() - Constructor for class com.canehealth.omopfhirmap.models.ProcedureOccurrence

ProcedureOccurrenceFetcher - Class in com.canehealth.omopfhirmap.fetchers

ProcedureOccurrenceFetcher() - Constructor for class com.canehealth.omopfhirmap.fetchers.ProcedureOccurrenceFetcher

ProcedureOccurrenceRepository - Interface in com.canehealth.omopfhirmap.repositories

ProcedureOccurrenceService - Class in com.canehealth.omopfhirmap.services

ProcedureOccurrenceService() - Constructor for class com.canehealth.omopfhirmap.services.ProcedureOccurrenceService

R

R4Bundle - Class in com.canehealth.omopfhirmap.fhir

R4Bundle() - Constructor for class com.canehealth.omopfhirmap.fhir.R4Bundle

R4Patient - Class in com.canehealth.omopfhirmap.fhir

R4Patient() - Constructor for class com.canehealth.omopfhirmap.fhir.R4Patient

read(String) - Static method in class com.canehealth.omopfhirmap.utils.HandleJsonFile

run() - Method in class com.canehealth.omopfhirmap.fetchers.BaseFetcher

run() - Method in class com.canehealth.omopfhirmap.fetchers.DrugExposureFetcher

run() - Method in class com.canehealth.omopfhirmap.fetchers.MeasurementFetcher

run() - Method in class com.canehealth.omopfhirmap.fetchers.ObservationFetcher

run() - Method in class com.canehealth.omopfhirmap.fetchers.PersonFetcher

run() - Method in class com.canehealth.omopfhirmap.fetchers.ProcedureOccurrenceFetcher

run() - Method in class com.canehealth.omopfhirmap.fetchers.VisitOccurrenceFetcher

run() - Method in class com.canehealth.omopfhirmap.utils.BundleRunnable

run(String...) - Method in class com.canehealth.omopfhirmap.OmopfhirmapApplication

S

save(C) - Method in interface com.canehealth.omopfhirmap.services.BaseService

save(Cohort) - Method in class com.canehealth.omopfhirmap.services.CohortService

save(DrugExposure) - Method in class com.canehealth.omopfhirmap.services.DrugExposureService

save(Measurement) - Method in class com.canehealth.omopfhirmap.services.MeasurementService

save(Observation) - Method in class com.canehealth.omopfhirmap.services.ObservationService

save(Person) - Method in class com.canehealth.omopfhirmap.services.PersonService

save(ProcedureOccurrence) - Method in class com.canehealth.omopfhirmap.services.ProcedureOccurrenceService

save(VisitOccurrence) - Method in class com.canehealth.omopfhirmap.services.VisitOccurrenceService

T

trimList(int) - Method in class com.canehealth.omopfhirmap.mapping.MainMapper

V

VisitOccurrence - Class in com.canehealth.omopfhirmap.models

VisitOccurrence() - Constructor for class com.canehealth.omopfhirmap.models.VisitOccurrence

VisitOccurrenceFetcher - Class in com.canehealth.omopfhirmap.fetchers

VisitOccurrenceFetcher() - Constructor for class com.canehealth.omopfhirmap.fetchers.VisitOccurrenceFetcher

VisitOccurrenceRepository - Interface in com.canehealth.omopfhirmap.repositories

VisitOccurrenceService - Class in com.canehealth.omopfhirmap.services

VisitOccurrenceService() - Constructor for class com.canehealth.omopfhirmap.services.VisitOccurrenceService

W

write(String, String) - Static method in class com.canehealth.omopfhirmap.utils.HandleJsonFile

writeOmop(String, int) - Method in class com.canehealth.omopfhirmap.mapping.MainMapper

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