Index

A B C D E F G H I J M N P Q R S T U V W
All Classes All Packages

A

addAttributes(String, String, int, int, int) - Method in class com.canehealth.ckblib.graph.BaseRelationService

addDifferential(String, String, int, int, int) - Method in class com.canehealth.ckblib.graph.DiseaseDisorderService

addEvidence(String, String) - Method in class com.canehealth.ckblib.graph.JournalArticleService

addRelation(String, String, int, int, int) - Method in class com.canehealth.ckblib.graph.AnatomicalSiteService

addRelation(String, String, int, int, int) - Method in class com.canehealth.ckblib.graph.MedicationService

addRelation(String, String, int, int, int) - Method in class com.canehealth.ckblib.graph.ProcedureService

addRelation(String, String, int, int, int) - Method in class com.canehealth.ckblib.graph.SignSymptomService

anatomicalSiteMention - Variable in class com.canehealth.ckblib.qtakes.model.QtakesRoot

AnatomicalSiteMention - Class in com.canehealth.ckblib.graph.model

AnatomicalSiteMention() - Constructor for class com.canehealth.ckblib.graph.model.AnatomicalSiteMention

AnatomicalSiteRepository - Interface in com.canehealth.ckblib.graph

AnatomicalSiteService - Class in com.canehealth.ckblib.graph

AnatomicalSiteService() - Constructor for class com.canehealth.ckblib.graph.AnatomicalSiteService

B

BaseQuery - Class in com.canehealth.ckblib.library.model

BaseQuery() - Constructor for class com.canehealth.ckblib.library.model.BaseQuery

BaseRelation - Class in com.canehealth.ckblib.graph.model

BaseRelation() - Constructor for class com.canehealth.ckblib.graph.model.BaseRelation

BaseRelationRepository - Interface in com.canehealth.ckblib.graph

BaseRelationService - Class in com.canehealth.ckblib.graph

BaseRelationService() - Constructor for class com.canehealth.ckblib.graph.BaseRelationService

begin - Variable in class com.canehealth.ckblib.qtakes.model.ConceptMention

build() - Method in class com.canehealth.ckblib.graph.D3Map.Builder

Builder(Driver) - Constructor for class com.canehealth.ckblib.graph.D3Map.Builder

C

CkbEfetch - Class in com.canehealth.ckblib.library.service

CkbEfetch() - Constructor for class com.canehealth.ckblib.library.service.CkbEfetch

CkbEsearch - Class in com.canehealth.ckblib.library.service

CkbEsearch() - Constructor for class com.canehealth.ckblib.library.service.CkbEsearch

CkblibConstants - Class in com.canehealth.ckblib.library.util

CkblibConstants

CkblibConstants() - Constructor for class com.canehealth.ckblib.library.util.CkblibConstants

CkbXpath - Class in com.canehealth.ckblib.library.util

CkbXpath() - Constructor for class com.canehealth.ckblib.library.util.CkbXpath

clearResults() - Method in class com.canehealth.ckblib.qtakes.service.QtakesService

code - Variable in class com.canehealth.ckblib.qtakes.model.ConceptAttribute

codingScheme - Variable in class com.canehealth.ckblib.qtakes.model.ConceptAttribute

com.canehealth.ckblib.application - package com.canehealth.ckblib.application

com.canehealth.ckblib.graph - package com.canehealth.ckblib.graph

com.canehealth.ckblib.graph.model - package com.canehealth.ckblib.graph.model

com.canehealth.ckblib.library.model - package com.canehealth.ckblib.library.model

com.canehealth.ckblib.library.service - package com.canehealth.ckblib.library.service

com.canehealth.ckblib.library.util - package com.canehealth.ckblib.library.util

com.canehealth.ckblib.qtakes.model - package com.canehealth.ckblib.qtakes.model

com.canehealth.ckblib.qtakes.service - package com.canehealth.ckblib.qtakes.service

ConceptAttribute - Class in com.canehealth.ckblib.qtakes.model

ConceptAttribute() - Constructor for class com.canehealth.ckblib.qtakes.model.ConceptAttribute

conceptAttributes - Variable in class com.canehealth.ckblib.qtakes.model.ConceptMention

ConceptAttributes - Class in com.canehealth.ckblib.graph.model

ConceptAttributes() - Constructor for class com.canehealth.ckblib.graph.model.ConceptAttributes

ConceptMention - Class in com.canehealth.ckblib.qtakes.model

ConceptMention() - Constructor for class com.canehealth.ckblib.qtakes.model.ConceptMention

convertStringToXMLDocument(String) - Static method in class com.canehealth.ckblib.library.util.CkbXpath

count - Variable in class com.canehealth.ckblib.library.model.Esearchresult

createJson(String) - Method in class com.canehealth.ckblib.graph.D3Map

createMap(String) - Method in class com.canehealth.ckblib.graph.D3Map

cui - Variable in class com.canehealth.ckblib.qtakes.model.ConceptAttribute

D

D3Map - Class in com.canehealth.ckblib.graph

D3Map.Builder - Class in com.canehealth.ckblib.graph

dateAnnotation - Variable in class com.canehealth.ckblib.qtakes.model.QtakesRoot

DemoApplication - Class in com.canehealth.ckblib.application

DemoApplication(MyService) - Constructor for class com.canehealth.ckblib.application.DemoApplication

diseaseDisorderMention - Variable in class com.canehealth.ckblib.qtakes.model.QtakesRoot

DiseaseDisorderMention - Class in com.canehealth.ckblib.graph.model

DiseaseDisorderMention() - Constructor for class com.canehealth.ckblib.graph.model.DiseaseDisorderMention

DiseaseDisorderRepository - Interface in com.canehealth.ckblib.graph

DiseaseDisorderService - Class in com.canehealth.ckblib.graph

DiseaseDisorderService() - Constructor for class com.canehealth.ckblib.graph.DiseaseDisorderService

driver() - Method in class com.canehealth.ckblib.application.Neo4jConfiguration

driver() - Method in class com.canehealth.ckblib.graph.Neo4jTestConfiguration

drugChangeStatusAnnotation - Variable in class com.canehealth.ckblib.qtakes.model.QtakesRoot

E

EFETCH_URL - Static variable in class com.canehealth.ckblib.library.util.CkblibConstants

end - Variable in class com.canehealth.ckblib.qtakes.model.ConceptMention

ESEARCH_BASE - Static variable in class com.canehealth.ckblib.library.util.CkblibConstants

ESEARCH_URL - Static variable in class com.canehealth.ckblib.library.util.CkblibConstants

esearchresult - Variable in class com.canehealth.ckblib.library.model.EsearchResultRoot

Esearchresult - Class in com.canehealth.ckblib.library.model

Esearchresult() - Constructor for class com.canehealth.ckblib.library.model.Esearchresult

EsearchResultRoot - Class in com.canehealth.ckblib.library.model

EsearchResultRoot() - Constructor for class com.canehealth.ckblib.library.model.EsearchResultRoot

F

fetch() - Method in class com.canehealth.ckblib.graph.D3Map

findAll() - Method in interface com.canehealth.ckblib.graph.AnatomicalSiteRepository

findAll() - Method in interface com.canehealth.ckblib.graph.DiseaseDisorderRepository

findAll() - Method in interface com.canehealth.ckblib.graph.MedicationRepository

findAll() - Method in interface com.canehealth.ckblib.graph.ProcedureRepository

findAll() - Method in interface com.canehealth.ckblib.graph.SignSymptomRepository

findAllByNameLikeIgnoreCase(String) - Method in interface com.canehealth.ckblib.graph.AnatomicalSiteRepository

findAllByNameLikeIgnoreCase(String) - Method in interface com.canehealth.ckblib.graph.DiseaseDisorderRepository

findAllByNameLikeIgnoreCase(String) - Method in interface com.canehealth.ckblib.graph.JournalArticleRepository

findAllByNameLikeIgnoreCase(String) - Method in interface com.canehealth.ckblib.graph.MedicationRepository

findAllByNameLikeIgnoreCase(String) - Method in interface com.canehealth.ckblib.graph.ProcedureRepository

findAllByNameLikeIgnoreCase(String) - Method in interface com.canehealth.ckblib.graph.SignSymptomRepository

findOneByCui(String) - Method in interface com.canehealth.ckblib.graph.AnatomicalSiteRepository

findOneByCui(String) - Method in interface com.canehealth.ckblib.graph.DiseaseDisorderRepository

findOneByCui(String) - Method in interface com.canehealth.ckblib.graph.MedicationRepository

findOneByCui(String) - Method in interface com.canehealth.ckblib.graph.ProcedureRepository

findOneByCui(String) - Method in interface com.canehealth.ckblib.graph.SignSymptomRepository

findOneByNameLikeIgnoreCase(String) - Method in interface com.canehealth.ckblib.graph.DiseaseDisorderRepository

findOneByNameLikeIgnoreCase(String) - Method in interface com.canehealth.ckblib.graph.SignSymptomRepository

findOneByPmid(String) - Method in interface com.canehealth.ckblib.graph.JournalArticleRepository

forD3(String) - Method in class com.canehealth.ckblib.graph.AnatomicalSiteService

forD3(String) - Method in class com.canehealth.ckblib.graph.DiseaseDisorderService

forD3(String) - Method in class com.canehealth.ckblib.graph.MedicationService

forD3(String) - Method in class com.canehealth.ckblib.graph.ProcedureService

forD3(String) - Method in class com.canehealth.ckblib.graph.SignSymptomService

fractionStrengthAnnotation - Variable in class com.canehealth.ckblib.qtakes.model.QtakesRoot

frequencyUnitAnnotation - Variable in class com.canehealth.ckblib.qtakes.model.QtakesRoot

from - Variable in class com.canehealth.ckblib.library.model.Translationset

G

get() - Method in class com.canehealth.ckblib.library.service.CkbEfetch

get() - Method in class com.canehealth.ckblib.library.service.CkbEsearch

getChain(BaseQuery) - Method in class com.canehealth.ckblib.library.service.CkbEfetch

getDiseaseByCui(String) - Method in class com.canehealth.ckblib.graph.DiseaseDisorderService

getDiseasesByName(String) - Method in class com.canehealth.ckblib.graph.DiseaseDisorderService

getFetchQuery(String) - Method in class com.canehealth.ckblib.library.model.BaseQuery

getMappingBasePackages() - Method in class com.canehealth.ckblib.application.Neo4jConfiguration

getMappingBasePackages() - Method in class com.canehealth.ckblib.graph.Neo4jTestConfiguration

getMessage() - Method in class com.canehealth.ckblib.library.service.ServiceProperties

getNodes(String) - Method in class com.canehealth.ckblib.library.util.CkbXpath

getPath(String) - Method in class com.canehealth.ckblib.library.service.CkbEfetch

getPathFromString(String, String) - Method in class com.canehealth.ckblib.library.service.CkbEfetch

getQtakesResults() - Method in class com.canehealth.ckblib.qtakes.service.QtakesService

getQuery() - Method in class com.canehealth.ckblib.library.model.BaseQuery

getQuery(String) - Method in class com.canehealth.ckblib.graph.D3Map

getQueryWithAll(String, String, String, String, String) - Method in class com.canehealth.ckblib.graph.D3Map

getRelationsByCui(String) - Method in interface com.canehealth.ckblib.graph.BaseRelationRepository

getRelationsByCui(String) - Method in class com.canehealth.ckblib.graph.BaseRelationService

getSymptomByCui(String) - Method in class com.canehealth.ckblib.graph.AnatomicalSiteService

getSymptomByCui(String) - Method in class com.canehealth.ckblib.graph.MedicationService

getSymptomByCui(String) - Method in class com.canehealth.ckblib.graph.ProcedureService

getSymptomByCui(String) - Method in class com.canehealth.ckblib.graph.SignSymptomService

getSymptomByName(String) - Method in class com.canehealth.ckblib.graph.AnatomicalSiteService

getSymptomByName(String) - Method in class com.canehealth.ckblib.graph.JournalArticleService

getSymptomByName(String) - Method in class com.canehealth.ckblib.graph.MedicationService

getSymptomByName(String) - Method in class com.canehealth.ckblib.graph.ProcedureService

getSymptomByName(String) - Method in class com.canehealth.ckblib.graph.SignSymptomService

getSymptomByPmid(String) - Method in class com.canehealth.ckblib.graph.JournalArticleService

H

header - Variable in class com.canehealth.ckblib.library.model.EsearchResultRoot

Header - Class in com.canehealth.ckblib.library.model

Header() - Constructor for class com.canehealth.ckblib.library.model.Header

HELP_STRING - Static variable in class com.canehealth.ckblib.library.util.CkblibConstants

I

idlist - Variable in class com.canehealth.ckblib.library.model.Esearchresult

ids() - Method in class com.canehealth.ckblib.library.model.Esearchresult

J

JournalArticle - Class in com.canehealth.ckblib.graph.model

JournalArticle() - Constructor for class com.canehealth.ckblib.graph.model.JournalArticle

JournalArticleRepository - Interface in com.canehealth.ckblib.graph

JournalArticleService - Class in com.canehealth.ckblib.graph

JournalArticleService() - Constructor for class com.canehealth.ckblib.graph.JournalArticleService

M

main(String[]) - Static method in class com.canehealth.ckblib.application.DemoApplication

measurementAnnotation - Variable in class com.canehealth.ckblib.qtakes.model.QtakesRoot

medicationMention - Variable in class com.canehealth.ckblib.qtakes.model.QtakesRoot

MedicationMention - Class in com.canehealth.ckblib.graph.model

MedicationMention() - Constructor for class com.canehealth.ckblib.graph.model.MedicationMention

MedicationRepository - Interface in com.canehealth.ckblib.graph

MedicationService - Class in com.canehealth.ckblib.graph

MedicationService() - Constructor for class com.canehealth.ckblib.graph.MedicationService

mergeConceptWithEvidence(String, String) - Method in interface com.canehealth.ckblib.graph.JournalArticleRepository

mergeDiseaseWithAnatomy(String, String, int, int, int) - Method in interface com.canehealth.ckblib.graph.AnatomicalSiteRepository

mergeDiseaseWithDisease(String, String, int, int, int) - Method in interface com.canehealth.ckblib.graph.DiseaseDisorderRepository

mergeDiseaseWithMedication(String, String, int, int, int) - Method in interface com.canehealth.ckblib.graph.MedicationRepository

mergeDiseaseWithProcedure(String, String, int, int, int) - Method in interface com.canehealth.ckblib.graph.ProcedureRepository

mergeDiseaseWithSymptom(String, String, int, int, int) - Method in interface com.canehealth.ckblib.graph.SignSymptomRepository

message() - Method in class com.canehealth.ckblib.library.service.MyService

MyService - Class in com.canehealth.ckblib.library.service

MyService(ServiceProperties) - Constructor for class com.canehealth.ckblib.library.service.MyService

N

name - Variable in class com.canehealth.ckblib.graph.model.JournalArticle

Neo4jConfiguration - Class in com.canehealth.ckblib.application

Neo4jConfiguration() - Constructor for class com.canehealth.ckblib.application.Neo4jConfiguration

Neo4jTestConfiguration - Class in com.canehealth.ckblib.graph

Neo4jTestConfiguration() - Constructor for class com.canehealth.ckblib.graph.Neo4jTestConfiguration

P

polarity - Variable in class com.canehealth.ckblib.qtakes.model.ConceptMention

post(String) - Method in class com.canehealth.ckblib.qtakes.service.QtakesService

procedureMention - Variable in class com.canehealth.ckblib.qtakes.model.QtakesRoot

ProcedureMention - Class in com.canehealth.ckblib.graph.model

ProcedureMention() - Constructor for class com.canehealth.ckblib.graph.model.ProcedureMention

ProcedureRepository - Interface in com.canehealth.ckblib.graph

ProcedureService - Class in com.canehealth.ckblib.graph

ProcedureService() - Constructor for class com.canehealth.ckblib.graph.ProcedureService

Q

QtakesRoot - Class in com.canehealth.ckblib.qtakes.model

QtakesRoot() - Constructor for class com.canehealth.ckblib.qtakes.model.QtakesRoot

QtakesService - Class in com.canehealth.ckblib.qtakes.service

QtakesService() - Constructor for class com.canehealth.ckblib.qtakes.service.QtakesService

query() - Method in class com.canehealth.ckblib.graph.D3Map

querykey - Variable in class com.canehealth.ckblib.library.model.Esearchresult

querytranslation - Variable in class com.canehealth.ckblib.library.model.Esearchresult

R

retmax - Variable in class com.canehealth.ckblib.library.model.Esearchresult

retstart - Variable in class com.canehealth.ckblib.library.model.Esearchresult

routeAnnotation - Variable in class com.canehealth.ckblib.qtakes.model.QtakesRoot

run(String...) - Method in class com.canehealth.ckblib.application.DemoApplication

S

saveArticle(JournalArticle) - Method in class com.canehealth.ckblib.graph.JournalArticleService

saveDisease(DiseaseDisorderMention) - Method in class com.canehealth.ckblib.graph.DiseaseDisorderService

saveSymptom(AnatomicalSiteMention) - Method in class com.canehealth.ckblib.graph.AnatomicalSiteService

saveSymptom(MedicationMention) - Method in class com.canehealth.ckblib.graph.MedicationService

saveSymptom(ProcedureMention) - Method in class com.canehealth.ckblib.graph.ProcedureService

saveSymptom(SignSymptomMention) - Method in class com.canehealth.ckblib.graph.SignSymptomService

ServiceProperties - Class in com.canehealth.ckblib.library.service

ServiceProperties() - Constructor for class com.canehealth.ckblib.library.service.ServiceProperties

setBaseQuery(BaseQuery) - Method in class com.canehealth.ckblib.library.service.CkbEfetch

setMessage(String) - Method in class com.canehealth.ckblib.library.service.ServiceProperties

setQtakesUrl(String) - Method in class com.canehealth.ckblib.qtakes.service.QtakesService

signSymptomMention - Variable in class com.canehealth.ckblib.qtakes.model.QtakesRoot

SignSymptomMention - Class in com.canehealth.ckblib.graph.model

SignSymptomMention() - Constructor for class com.canehealth.ckblib.graph.model.SignSymptomMention

SignSymptomRepository - Interface in com.canehealth.ckblib.graph

SignSymptomService - Class in com.canehealth.ckblib.graph

SignSymptomService() - Constructor for class com.canehealth.ckblib.graph.SignSymptomService

strengthAnnotation - Variable in class com.canehealth.ckblib.qtakes.model.QtakesRoot

strengthUnitAnnotation - Variable in class com.canehealth.ckblib.qtakes.model.QtakesRoot

T

text - Variable in class com.canehealth.ckblib.qtakes.model.ConceptMention

timeMention - Variable in class com.canehealth.ckblib.qtakes.model.QtakesRoot

to - Variable in class com.canehealth.ckblib.library.model.Translationset

translationset - Variable in class com.canehealth.ckblib.library.model.Esearchresult

Translationset - Class in com.canehealth.ckblib.library.model

Translationset() - Constructor for class com.canehealth.ckblib.library.model.Translationset

translationstack - Variable in class com.canehealth.ckblib.library.model.Esearchresult

tui - Variable in class com.canehealth.ckblib.qtakes.model.ConceptAttribute

type - Variable in class com.canehealth.ckblib.library.model.Header

U

updateRelationshipAttributes(String, String, int, int, int) - Method in interface com.canehealth.ckblib.graph.BaseRelationRepository

V

version - Variable in class com.canehealth.ckblib.library.model.Header

W

webenv - Variable in class com.canehealth.ckblib.library.model.Esearchresult

withConcept(String) - Method in class com.canehealth.ckblib.graph.D3Map.Builder

withCui(String) - Method in class com.canehealth.ckblib.graph.D3Map.Builder

withFeatures(String) - Method in class com.canehealth.ckblib.graph.D3Map.Builder

withQuery(String) - Method in class com.canehealth.ckblib.graph.D3Map.Builder

withRelationship(String) - Method in class com.canehealth.ckblib.graph.D3Map.Builder

withSecondCui(String) - Method in class com.canehealth.ckblib.graph.D3Map.Builder

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